CSE 225 Chien, Winter 2003

Reading List -- Final

Grid Computing – Vision and Realities (2 classes)

Vision – Lecture #1

- Smarr, Grids in Context, Gridbook1999

- Wladawsky-Berger, The Grid and the Future of E-business, Gridbook2003

- Berman, Fox, Hey, The Grid: Past, Present, Future, GridInfrastructure2003

- Foster, The Grid: A New Infrastructure for 21^st Century Science, GridInfrastructure2003

Applications – Lecture #2

- Baldridge and Bourne, The new Biology and the Grid, GridInfrastructure2003

- Frey, et. al., Combinatorial Chemistry and the Grid, GridInfrastructure 2003

- Brady, et. al., Ediamond: A Grid-Enabled Federated Database Of Annotated Mammograms, GridInfrastructure2003

Desktop Grids – Model Systems (4 classes)

Desktop Grids – Lecture #3

- Shoch and Hupp, The “Worm” Programs – Early Experience with a Distributed Computation, Computing Practices1982

- Anderson, et., al., SetiAtHome An Experiment in Public0Resource Computing, Communications of the ACM2002

- Chien, Calder, Elbert Bhatia, Entropia: Architecture and Performance of an Enterprise Desktop Grid System,

To appear in Journal for parallel and distributed computing2003

Desktop Grids #2 and #3 – Lecture #4 and #5

- Litzkow, Livny and Mutka, Condor – A Hunter of Idle Workstations, Proceedings of the 8^th International Conference of Distributed Computing Systems, pgs. 104-111, 1988

- Raman, Livnya and Solomon, Distributed Resource Management for High Throughput Computing, IEEE High Performance Distributed Computing, 1998

- Thain, Tanenbaum and Livny, Condor and the Grid, GridInfrastructure2003

Desktop Grids #4 and #5

- Condor-G James Frey, et. al., "Condor-G: A Computation Management Agent for Multi-Institutional Grids", HPDC10 San Francisco, California,

- XtremeWeb XtremWeb : A Generic Global Computing System--Gilles Fedak, Cécile Germain, Vincent Néri and Franck Cappello -- CCGRID2001, workshop on Global Computing on Personal Devices, May 2001.

- Boinc BOINC system (see http://boinc.berkeley.edu/intro.html)

Collective Communication and Parallel Groups

- Taufer, Combining Task and Data Parallelism to Speed up Protein Folding on a Desktop Grid Platform, CCGrid 2003

- Cappello, et al. , MPICH-V: Toward a Scalable Fault Tolerant MPI for Volatile Nodes, SC2002

Server Grid Infrastructures – Globus and OGSA (4 classes)

Globus #1

- Basics and System Architecture

- Foster, The Grid: A New Infrastructure for 21st Century Science, GridInfrastructure2003 (this was previously assigned)

- Foster, et. al. The Anatomy of the Grid: Enabling Scalable Virtual Organizations, International J. Supercomputer Applications, 15(3), 2001.

- Foster, et. al. Globus: A Metacomputing Infrastructure Toolkit, Intl J. Supercomputer Applications, 11(2):115-128, 1997. (background)

Globus #2

- Information services and security

- A Security Architecture for Computational Grids. I. Foster, C. Kesselman, G. Tsudik, S. Tuecke. Proc. 5th ACM Conference on Computer and Communications Security Conference, pp. 83-92, 1998.

Globus #3

- resource management, selection, and scheduling

- A Resource Management Architecture for Metacomputing Systems. K. Czajkowski, I. Foster, N. Karonis, C. Kesselman, S. Martin, W. Smith, S. Tuecke. Proc. IPPS/SPDP '98 Workshop on Job Scheduling Strategies for Parallel Processing, pg. 62-82, 1998.

- (optional) SNAP: A Protocol for Negotiating Service Level Agreements and Coordinating Resource Management in Distributed Systems. K. Czajkowski, I. Foster, C. Kesselman, V. Sander, S. Tuecke; 8th Workshop on Job Scheduling Strategies for Parallel Processing, Edinburgh, Scotland, July, 2002.

Globus/SRB #4

- Data Grids

- The Data Grid: Towards an Architecture for the Distributed Management and Analysis of Large Scientific Datasets.  A. Chervenak, I. Foster, C. Kesselman, C. Salisbury, S. Tuecke. Journal of Network and Computer Applications, 23:187-200, 2001 (based on conference publication from Proceedings of NetStore Conference 1999).

- Data Management and Transfer in High Performance Computational Grid Environments. B. Allcock, J. Bester, J. Bresnahan, A. L. Chervenak, I. Foster, C. Kesselman, S. Meder, V. Nefedova, D. Quesnal, S. Tuecke. Parallel Computing Journal, Vol. 28 (5), May 2002, pp. 749-771.

- MySRB & SRB - Components of a Data Grid, Arcot Rajasekar, Michael Wan and Reagan Moore, The 11th International Symposium on High Performance Distributed Computing (HPDC-11) Edinburgh, Scotland, July 24-26, 2002

Globus #5

- Physiology of the Grid and OGSA

- The Physiology of the Grid: An Open Grid Services Architecture for Distributed Systems Integration. I. Foster, C. Kesselman, J. Nick, S. Tuecke, Open Grid Service Infrastructure WG, Global Grid Forum, June 22, 2002.

- OGSA Working Group Draft V1

- OGSI Grid Service Specification Draft

Legion – An Object-based Grid Programming Model and System

- Andrew S Grimshaw and William A. Wulf. Legion flexible support for wide-area computing. In Proceedings of the Seventh ACM SIGOPS European Workshop, pages 205--212, Connemara, Ireland, September 1996.

Course Project Plans

- selected infrastructure

- proposed objectives and plan

- clear success criteria

Research Topics in Grid Computing (2 classes)

- MicroGrid – Modelling and simulation of desktop Grids

- Scheduling in Grids

Course Project Presentations (1 class)

References

[Gridbook1999] The Grid: Blueprint for a New Computing Infrastructure, Morgan Kaufmann (eds. Foster, Kesselman), 1999.

[Gridbook 2003] The Grid: Blueprint for a New Computing Infrastructure, Second Edition Morgan Kaufmann (eds. Foster, Kesselman), 2003.

[GridInfrastructure2003] Grid Computing: Making the Global Infrastructure a Reality, (eds. Fox, Berman, Hey), Wiley and Sons 2003.